Publications
Published research
Below is a list of the publications generated by our members.
Abed, Jassim M.; Ali, Atheer H.; Yaseen, Ali T.; Al-Faisal, Abbas; Mutlak, Falah; Jassim, Furat K.; Jerry, Dean R.; Jawad, Laith A. (2024) 'Barramundi (Lates calcarifer) from Iraq: a new record for the Arabian Gulf, with a highlight on it genetic origins and description of two skeletal deformities'. New Zealand Journal of Zoology http://dx.doi.org/10.1080/03014223.2023.2255147
Arbon P, Andrade Martinez M, Jerry D and Condon K (2024) Towards a 'systems' approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, Volume16, Issue 2, 923-941. https://doi.org/10.1111/raq.12877
Arbon, P.M.; Andrade Martinez, Maria; Garrett, M. Andrade; Jerry, D.R.; Condon, K. (2024) 'Determining patterns of tissue tropism for IHHNV, GAV and YHV-7 infection in giant black tiger shrimp (Penaeus monodon) using real-time RT-qPCR'. Aquaculture, 584 http://dx.doi.org/10.1016/j.aquaculture.2024.740680
Atwood, Trisha B., Romanou, Anastasia, DeVries, Tim, Lerner, Paul E., Mayorga, Juan S., Bradley, Darcy, Cabral, Reniel B., Schmidt, Gavin A., and Sala, Enric (2024) Atmospheric CO2 emissions and ocean acidification from bottom-trawling. Frontiers in Marine Science, 10. 1125137. https://www.frontiersin.org/journals/marine-science/articles/10.3389/fmars.2023.1125137/full
Bourne, David G., Sato, Yui, and Smith, Hillary A. (2024) Microbes guide corals looking to find a home. Trends in Microbiology, 32 (2). pp. 120-121. https://doi.org/10.1016/j.tim.2023.11.017
D’Alberto BM, Clark-Shen N, Xu Tingting K, Green ME, Hutchinson N, Chin A, Simpfendorfer CA (2024) Preliminary life history of the Critically Endangered bottlenose wedgefish Rhynchobatus australiae from Southeast Asia. Endang Species Res 53:363-378. https://doi.org/10.3354/esr01294
De Vos, B.C., Cyrus, M.D., Bolton, J.J, B.M, Macey. (2024) Effect of basket height and stocking density on production of the sea urchin Tripneustes gratilla: insights and recommendations. Aquaculture International, 1 - 26 https://doi.org/10.1007/s10499-024-01412-8
Eurich, Jacob G.; Friedman, Whitney R.; Kleisner, Kristin M.; Zhao, Lily Z.; Free, Christopher M.; Fletcher, Meghan; Mason, Julia G.; Tokunaga, Kanae; Aguion, Alba; Dell'Apa, Andrea; Dickey-Collas, Mark; Fujita, Rod; Golden, Christopher D.; Hollowed, Anne B.; Ishimura, Gakushi; Karr, Kendra A.; Kasperski, Stephen; Kisara, Yuga; Lau, Jacqueline D.; Mangubhai, Sangeeta; Osman, Layla; Pecl, Gretta T.; Schmidt, Jörn O.; Allison, Edward H.; Sullivan, Patrick J.; Cinner, Joshua E.; Griffis, Roger B.; Mcclanahan, Timothy R.; Stedman, Richard C.; Mills, Katherine E. (2024) 'Diverse pathways for climate resilience in marine fishery systems'. Fish and Fisheries, 25 (1):38-59. https://onlinelibrary.wiley.com/doi/10.1111/faf.12790
Lutzenkirchen L, Duce S and Bellwood D (2024) Exploring benthic habitat assessments on coral reefs: a comparison of direct field measurements versus remote sensing. Coral Reefs. https://doi.org/10.1007/s00338-024-02468-x
Marc, Adrien F.; Guppy, Jarrod L.; Goldsbury, Julie; Rudd, Donna; Cate, Holly S.; Paris, Damien B.B.P.; Jerry, Dean R. (2024) 'Characterization of sperm quality in captive-bred barramundi (Lates calcarifer): Effect on spawning performance and paternal contribution in mass-spawning events'. Aquaculture, 585 http://dx.doi.org/10.1016/j.aquaculture.2024.740717
Mather, Rachel, Chin, Andrew, Rigby, Cassandra, Cooke, Steven J., Fahmi, , Haque, Alifa Bintha, Mizrahi, Meira, and Grant, Michael I. (2024) Murky waters: Assessing the vulnerabilities of Indo-West Pacific non-marine elasmobranchs to inform future conservation planning priorities. Aquatic Conservation: Marine and Freshwater Ecosystems, 34 (1). e4039. https://doi.org/10.1002/aqc.4039
Mohammadi, Zohre; Bhati, Abhishek Singh; Jerry, Dean (2024) 'A Pre-Science Style Model of Aquaculture Tourism Businesses'. Tourism Planning & Development, 21 (2):245-253 http://dx.doi.org/10.1080/21568316.2022.2135133
Moran, Megan N.; Jones, D.B.; Jensen, S.A.; Marcoli, R.; Jerry, D. R. (2024) 'Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement'. Reviews in Aquaculture, http://dx.doi.org/10.1111/raq.12889
Neil, Rachel C., Barton, Jonathan A., Dougan, Winona, Dworjanyn, Symon, Heyward, Andrew, Mos, Benjamin, Bourne, David G., and Humphrey, Craig (2024) Size matters: Microherbivores make a big impact in coral aquaculture. Aquaculture, 581. https://doi.org/10.1016/j.aquaculture.2023.740402
Ritter, Carmen J., and Bourne, David G. (2024) Marine amphipods as integral members of global ocean ecosystems. Journal of Experimental Marine Biology and Ecology, 572. https://doi.org/10.1016/j.jembe.2023.151985
Saleh, Alzayat; Hasan, Md Mehedi; Raadsma, Herman W.; Khatkar, Mehar S.; Jerry, Dean; Rahimi Azghadi, Mostafa (2024) 'Prawn Morphometrics and Weight Estimation from Images using Deep Learning for Landmark Localization'. AQUACULTURAL ENGINEERING, 106 . http://dx.doi.org/10.1016/j.aquaeng.2024.102391
Saleh, Alzayat; Sheaves, Marcus; Jerry, Dean; Rahimi Azghadi, Mostafa (2024) 'Applications of deep learning in fish habitat monitoring: A tutorial and survey'. Expert Systems with Applications, 238 http://dx.doi.org/10.1016/j.eswa.2023.121841
Siddiqi A, Bergseth B, Diedrich A and Chin A (2024) Understanding the perceived conservation benefits of shark-marine tourism in the Global South. Marine Policy, 161. https://doi.org/10.1016/j.marpol.2023.105995
Smith, Bethany, and Diedrich, Amy (2024) A systematic review of current progress in community based vulnerability assessments. Regional Environmental Change, 24. 21. https://doi.org/10.1007/s10113-023-02179-z
Terzin, Marko, Laffy, Patrick W., Robbins, Steven, Yeoh, Yun Kit, Frade, Pedro R., Glasl, Bettina, Webster, Nicole S, and Bourne, David G. (2024) The road forward to incorporate seawater microbes in predictive reef monitoring. Environmental Microbiome, 19. 5. https://doi.org/10.1186/s40793-023-00543-4
Willis-Norton, Ellen, Mangin, Tracey, Schroeder, Donna, Cabral, Reniel B., and Gaines, Steven D. (2024) A synthesis of socioeconomic and sociocultural indicators for assessing the impacts of offshore renewable energy on fishery participants and fishing communities. Marine Policy, 161. 106013. https://doi.org/10.1016/j.marpol.2024.106013
Ani C, Smithers S, Lewis S, Baird M and Robson B (2023) eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285.
Atwood, Trisha B., Sala, Enric, Mayorga, Juan, Bradley, Darcy, Cabral, Reniel B., Auber, Arnaud, Cheung, William, Ferretti, Francesco, Friedlander, Alan M., Gaines, Steven D., Garilao, Cristina, Goodell, Whitney, Halpern, Benjamin S., Hinson, Audra, Kaschner, Kristin, Kesner-Reyes, Kathleen, Leprieur, Fabien, McGowan, Jennifer, Morgan, Lance E., Mouillot, David, Palacios-Abrantes, Juliano, Possingham, Hugh P., Rechberger, Kristin D., Worm, Boris, and Lubchenco, Jane (2023) Reply to: Quantifying the carbon benefits of ending bottom trawling. Nature, 617 (7960). E3-E5.
Bansemer M, Salini M, Nankervis L and Stone D (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572.
Bergseth, Brock J.; Arias, Adrian; Barnes, Michele L.; Caldwell, Iain; Datta, Amber; Gelcich, Stefan; Ham, Sam H.; Lau, Jacqueline D.; Ruano-Chamorro, Cristina; Smallhorn-West, Patrick; Weekers, Damian; Zamborain-Mason, Jessica; Cinner, Joshua E. (2023) 'Closing the compliance gap in marine protected areas with human behavioural sciences'. Fish and Fisheries, 24 :695-704. http://dx.doi.org/10.1111/faf.12749
Blythe, Jessica L.; Gill, David A.; Claudet, Joachim; Bennett, Nathan J.; Gurney, Georgina G.; Baggio, Jacopo A.; Ban, Natalie C.; Bernard, Miranda L.; Brun, Victor; Darling, Emily S.; Di Franco, Antonio; Epstein, Graham; Franks, Phil; Horan, Rebecca; Jupiter, Stacy; Lau, Jacqueline; Lazzari, Natalie; Mahajan, Shauna L.; Mangubhai, Sangeeta; Naggea, Josheena; Turner, Rachel A.; Zafra-Calvo, Noelia (2023) 'Blue justice: a review of emerging scholarship and resistance movements'. Cambridge Prisms: Coastal Futures, 1 . http://dx.doi.org/10.1017/cft.2023.4
Budd A, Schils T, Cooper M, Lyons M, Mills M, Deinhart M, Le Port A, Huerlimann R and Strugnell J (2023) Monitoring threatened species with environmental DNA and open ecological data: Local distribution and habitat preferences of scalloped hammerhead sharks (Sphyrna lewini). Biological Conservation, 278, 109881
Cabral R, Geronimo R, Mamauag S, Silva J, Mancao R and Atrigenio M (2023) Ensuring Aquatic Food Security in the Philippines. The Philippine Journal of Fisheries, 30 (2). pp. 298-313
Candebat C, Eddie T, Marc A, Fernando F and Nankervis L (2023) Exploring the physiological plasticity of giant grouper (Epinephelus lanceolatus) to dietary sulfur amino acids and taurine to measure dietary requirements and essentiality. Fish Physiology and Biochemistry, 49:829-851
Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2023) Year-Round Spawning, Filial Cannibalism, and Embryonic and Larval Development of the Coral Reef Fish Orchid Dottyback, Pseudochromis fridmani. Fishes, 8 (9). 451.
Chew, Xian Zhe; Gibson-Kueh, Susan; Jerry, Dean R.; Shen, Xueyan (2023) 'Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections'. Aquaculture, 572 . http://dx.doi.org/10.1016/j.aquaculture.2023.739516
Chin, A., Molloy, F.J., Cameron, D., Day, J.C., Cramp, J., Gerhardt, K.L., Heupel, M.R., Read, M., and Simpfendorfer, C.A. (2023) Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation. Conservation Biology 37(1), e13917.
Clark-Shen N, Chin A, Arunrugstichai S, Labaja J, Mizrahi M, Simeon B and Hutchinson N (2023) Status of Southeast Asia's marine sharks and rays. Conservation Biology, 37 (1).
Cumming, Graeme S.; Adamska, Maja; Barnes, Michele L.; Barnett, Jon; Bellwood, David R.; Cinner, Joshua E.; Cohen, Philippa J.; Donelson, Jennifer M.; Fabricius, Katharina; Grafton, R. Quentin; Grech, Alana; Gurney, Georgina G.; Hoegh-Guldberg, Ove; Hoey, Andrew S.; Hoogenboom, Mia O.; Lau, Jacqueline; Lovelock, Catherine E.; Lowe, Ryan; Miller, David J.; Morrison, Tiffany H.; Mumby, Peter J.; Nakata, Martin; Pandolfi, John M.; Peterson, Garry D.; Pratchett, Morgan S.; Ravasi, Timothy; Riginos, Cynthia; Rummer, Jodie L.; Schaffelke, Britta; Wernberg, Thomas; Wilson, Shaun K. (2023) 'Research priorities for the sustainability of coral-rich western Pacific seascapes'. Regional Environmental Change, 23 (2). http://dx.doi.org/10.1007/s10113-023-02051-0
De Vos, Bas C.; Cyrus, Mark D.; Macey, Brett M.; Batik, Theodore; Bolton, John J. (2023) 'Combining computer vision and standardised protocols for improved measurement of live sea urchins for research and industry'. Aquaculture, Fish and Fisheries, 3 (6):507-517. http://dx.doi.org/10.1002/aff2.137
Digamadulla, Dayananda Senathera, Asoka, Jayasinghe M., Jones, Clive, Jayasinghe‐Mudalige, Udith K., Wijenayake, W. M. H. Kelum, Amarasinghe, Upali S., and de Croos, M. D. S. T. (2023) Appraisal of culture‐based fisheries of giant freshwater prawn (Macrobrachium rosenbergii, De Man, 1879) in reservoirs of Sri Lanka. Aquaculture, Fish and Fisheries, 3 (1). pp. 81-95.
Gahan, James; Bellwood, David R.; Nankervis, Leo; Tebbett, Sterling B. (2023) 'Spatial and temporal variability in tropical off-reef zooplankton across broad spatial and temporal scales'. Marine Environmental Research, 191 http://dx.doi.org/10.1016/j.marenvres.2023.106169
Gill, David A.; Blythe, Jessica; Bennett, Nathan; Evans, Louisa; Brown, Katrina; Turner, Rachel A.; Baggio, Jacopo A.; Baker, Dana; Ban, Natalie C.; Brun, Victor; Claudet, Joachim; Darling, Emily; Di Franco, Antonio; Epstein, Graham; Estradivari, ; Gray, Noella J.; Gurney, Georgina G.; Horan, Rebecca P.; Jupiter, Stacy D.; Lau, Jacqueline D.; Lazzari, Natali; Lestari, Peni; Mahajan, Shauna L.; Mangubhai, Sangeeta; Naggea, Josheena; Selig, Elizabeth R.; Whitney, Charlotte K.; Zafra-Calvo, Noelia; Muthiga, Nyawira A. (2023) 'Triple exposure: Reducing negative impacts of climate change, blue growth, and conservation on coastal communities'. One Earth, 6 (2):118-130. http://dx.doi.org/10.1016/j.oneear.2023.01.010
Giri, Nyoman Adiasmara, Irvin, Simon, Haryanti, , Sudewi, , Selamet, Bejo, Jones, Clive M., and Mujiono, (2023) Growth Response of Lobster Panulirus homarus Reared in Tanks and in Floating Net Cages Fed with Compound and Fresh Feed. Sains Malaysiana, 52 (10). pp. 2747-2759.
Harris D, Webster J, Vila-Concejo A, Duce S, Leon J and Hacker S (2023) Defining multi-scale surface roughness of a coral reef using a high-resolution LiDAR digital elevation model. Geomorphology, 439.
Hermanto, B., Bourne, D.G., and Smith, H. (2023) Comparative image analysis approaches to assess ecological effects of macroalgal removal on inshore reefs of Magnetic Island, Australia. In: IOP Conference Series: Earth and Environmental Science (1137) 012052. From: MarBioUtiCoM: International Seminar on Marine Biodiversity, Utilization, Conservation and Management, 8-9 August 2022, Online.
Kanno, Shiori; Heupel, Michelle R.; Sheaves, Marcus J.; Simpfendorfer, Colin A. (2023) 'Mangrove use by sharks and rays: A review'. 724 :167-183. http://dx.doi.org/10.3354/meps14452
Kemink, Kaylan, Diedrich, Amy, Adams, Vanessa M., and Pressey, Robert L. (2023) Exploring motives for participation in a perpetual easement program: Going beyond financial incentives. Biological Conservation, 284. 110193.
Leahy, Susannah M.; Jerry, Dean R.; Wedding, Brett B.C.; Robins, Julie; Wright, Carole L.; Sadekov, Aleksey; David, Stephen B.; Jones, David B.; Williams, Samuel M.; Grauf, Steve; Pavich, Luke; McLennan, Mark; Sellini, Michelle J.; Goldsbury, Julie A.; Saunders, Richard J. (2023) 'Multimethod approach to advance provenance determination of fish in stocked systems'. Canadian Journal of Fisheries and Aquatic Sciences, 80 :1410-1424. http://dx.doi.org/10.1139/cjfas-2022-0292
Li, Jie, Zou, Yiyang, Li, Qiqi, Zhang, Jian, Bourne, David G., Lyu, Yuanjiao, Liu, Cong, and Zhang, Si (2023) A coral-associated actinobacterium mitigates coral bleaching under heat stress. Environmental Microbiome, 18 (1). 83.
Lutzenkirchen L, Duce S and Bellwood D (2023) The global biogeography of reef morphology. Global Ecology and Biogeography.
Marc, Adrien; Guppy, Jarrod L.; Marshall, Hayley; Jerry, Dean R.; Rudd, Donna; Paris, Damien B.B.P. (2023) 'Optimization of a non-activating medium for short-term chilled storage of barramundi (Lates calcarifer) testicular spermatozoa'. Fish Physiology and Biochemistry, 49 :559-576. http://dx.doi.org/10.1007/s10695-023-01191-8
Marcoli, R.; Jones, D.B.; Massault, C.; Marc, A.F.; Moran, M.; Harrison, P.J.; Cate, H.S.; Lopata, A.L.; Jerry, D.R. (2023) 'The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview'. Aquaculture, 576 . http://dx.doi.org/10.1016/j.aquaculture.2023.739859
Mitchell J, Drymon J, Vardon J, Coulson P, Simpfendorfer C, Scyphers S, Kajiura S, Hoel K, Williams S, Ryan K, Barnett A, Heupel M, Chin A, Navarro M, Langlois T, Ajemian M, Gilman E, Prasky E and Jackson G (2023) Shark depredation: future directions in research and management. Reviews in Fish Biology and Fisheries, 33. pp. 475-499
Nambiar, Geetika; Owens, Leigh; Elliman, Jennifer (2023) 'Cherax quadricarinatus Resistant to Chequa iflavirus: A Pilot Study'. Microorganisms, 11 (3). http://dx.doi.org/10.3390/microorganisms11030578
Nesa, Nur Un; Elliott, Lisa; Zeng, Chaoshu; Jones, Rhondda; Cavalieri, John (2023) 'Redclaw, Cherax quadricarinatus sex-separated rearing strategy enhances reproduction in females'. Aquaculture, 573 .
O'Brien, Paul A.; Tan, Shangjin; Frade, Pedro R.; Robbins, Steven J.; Engelberts, J. Pamela; Bell, Sara C.; Vanwonterghem, Inka; Miller, David J.; Webster, Nicole S.; Zhang, Guojie; Bourne, David G. (2023) 'Validation of key sponge symbiont pathways using genome-centric metatranscriptomics'. Environmental Microbiology, 25 (12):3207-3224. https://doi.org/10.1111/1462-2920.16509
Rennie B, Nowland SJ, Cooke IR, Strugnell JM (2024) Filtration rate and bioremediatory potential of the tropical Blacklip Rock Oyster (Saccostrea lineage J). Aquaculture Environment Interactions. https://doi.org/10.3354/aei00477
Ruethers, Thimo; Johnston, Elecia B.; Karnaneedi, Shaymaviswanathan; Nie, Shuai; Nugraha, Roni; Taki, Aya C.; Kamath, Sandip D.; Williamson, Nicholas A.; Mehr, Sam S.; Campbell, Dianne E.; Lopata, Andreas L. (2023) 'Commercial shellfish skin prick test extracts show critical variability in allergen repertoire'. 78 (2):3261-3265. https://doi.org/10.1111/all.15853
Saleh, Alzayat; Jones, David; Jerry, Dean; Azghadi, Mostafa Rahimi (2023) 'MFLD-net: a lightweight deep learning network for fish morphometry using landmark detection'. Aquatic Ecology, 57 :913-931 http://dx.doi.org/10.1007/s10452-023-10044-8
Smith, Hillary A.; Fulton, Stella E.; McLeod, Ian M.; Page, Cathie A.; Bourne, David G. (2023) 'Sea-weeding: Manual removal of macroalgae facilitates rapid coral recovery'. Journal of Applied Ecology, 60 (11):2459-2471. https://doi.org/10.1111/1365-2664.14502
Sutcliffe, Sarah; Lau, Jacqueline D.; Barnes, MicheleL.; Mbaru, Emmanuel; Wade, Eric; Hungito, Wilda; Muly, Innocent Mulwodo; Wanyonyi, Stephen; Muthiga, Nyawira A.; Cohen, Philippa J.; Cinner, Joshua (2023) 'COVID-19 impacts on food systems in fisheries-dependent island communities'. Ecology and Society, 28 (1). http://dx.doi.org/10.5751/ES-13769-280101
Taki, Aya C., Ruethers, Thimo, Nugraha, Roni, Karnaneedi, Shaymaviswanathan, Williamson, Nicholas, Nie, Shuai, Leeming, Michael G., Mehr, Sam S., Campbell, Dianne E., and Lopata, Andreas L. (2023) Thermostable allergens in canned fish: Evaluating risks for fish allergy. Allergy: European Journal of Allergy and Clinical Immunology, 78 (12). pp. 3221-3234.
Udayantha, H.M.V.; Lee, Sukkyoung; Liyanage, D.S.; Lim, Chaehyeon; Jeong, Taehyug; Omeka, W.K.M.; Yang, Kyerim; Kim, Gaeun; Lee, Jihun; Nadarajapillai, Kishanthini; Ganeshalingam, Subothini; Park, Cheong-Uk; Lee, Jiwon; Oh, Seong-Rip; Gong, Po; Jang, Yeounghwan; Hyun, Jaemin; Park, Aejen; Koh, Hyoung-Bum; Kim, Mun-Kwan; Jones, David B.; Massault, Cecile; Jerry, Dean R.; Lee, Jeehee (2023) 'Identification of candidate variants and genes associated with temperature tolerance in olive flounders by Genome-Wide Association Study (GWAS)'. Aquaculture, 576 http://dx.doi.org/10.1016/j.aquaculture.2023.739858
Vu N, Jerry D, Edmunds R, Jones D and Zenger K (2023) Development of a global SNP resource for diversity, provenance, and parentage analyses on the Indo-Pacific giant black tiger shrimp (Penaeus monodon). Aquaculture, 563 (1).
Whitelaw B, Finn J, Zenger K, Cooke I, Morse P and Strugnell J (2023) SNP data reveals the complex and diverse evolutionary history of the blue-ringed octopus genus (Octopodidae: Hapalochlaena) in the Asia-Pacific. Molecular Phylogenetics and Evolution, 186.
Arbon P, Condon K, Andrade Martinez M and Jerry D (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548.
Aquino J, Elliott L, Zeng C and Paris D (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889
Budd A, Guppy J, Thepot V, Domingos J and Jerry D (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560.
Budd A, Robins J, Whybird O and Jerry D (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3).
Baje L, Chin A, White W and Simpfendorfer C (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614
Bouyoucos I, Simpfendorfer C, Planes S, Schwieterman G, Weideli O and Rummer J (2022) Thermally insensitive physiological performance allows neonatal sharks to use coastal habitats as nursery areas. Marine Ecology Progress Series, 682. pp. 137-152
Chen J, Zeng C and Cobcroft J (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549.
Chin A, Molloy F, Cameron D, Day J, Cramp J, Gerhardt K, Heupel M, Read M and Simpfendorfer C (2022) Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation. Conservation Biology, 37 (1).
Condon K, Huerlimann R, Charles T, Lowrey R, Arbon P and Jerry D (2022) Using bacterial whole genome sequencing to identify toxin genes associated with disease outbreaks in black tiger shrimp (Penaeus monodon) aquaculture production. Aquaculture, 546.
Cooper M, Villacorta-Rath C, Burrows D, Jerry D, Carr L, Barnett A, Huveneers C and Simpfendorfer C (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023
D'Alberto B, White W, Chin A, Dharmadi and Simpfendorfer C (2022) Untangling the Indonesian tangle net fishery: Describing a data-poor fishery targeting large, threatened rays (Superorder Batoidea). Aquatic Conservation: marine and freshwater ecosystems, 32 (2). pp. 366-384
Diedrich A, Duce S, Eriksson H, Govan H, Harohau D, Koczberski G, Lau J, Mills D, Minter T, Steenbergen D and Troell M (2022) An applied research agenda for navigating diverse livelihood challenges in rural coastal communities in the tropics. One Earth, 5 (11). pp. 1205-1215
Free C, Cabral R, Froehlich H, Battista W, Ojea E, O’Reilly E, Palardy J, García Molinos J, Siegel K, Arnason R, Juinio-Meñez M, Fabricius K, Turley C and Gaines S (2022) Expanding ocean food production under climate change. Nature, 605. pp. 490-496
Genodepa J, Zeng C, Militz T and Southgate P (2022) Influence of Food Density on Digestive Enzyme Activities in Newly Hatched Larvae of the Spiny Lobster, Panulirus ornatus. Journal of Shellfish Research, 41 (3). pp. 381-387
Genodepa J, Zeng C, Militz T and Southgate P (2022) Ontogenetic variation in digestive enzyme activities within embryos and newly-hatched larvae of the tropical spiny lobster, Panulirus ornatus. Aquaculture, 548 (Part 1).
Genodepa J, Zeng C, Militz T and Southgate P (2022) Responses of digestive enzyme profiles to various scenarios of food availability in newly-hatched Stage I phyllosoma larvae of the tropical spiny lobster Panulirus ornatus. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 261.
Gong J, Huang C, Yu K, Li S, Zeng C and Ye H (2022) The effects of feeding ration and cheliped autotomy on the growth and expression of ecdysteroid receptor in early juvenile mud crabs, Scylla paramamosain. Aquaculture Reports, 25.
Guppy J, Marc A and Jerry D (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552.
Hasan M, Raadsma H, Thomson P, Wade N, Jerry D and Khatkar M (2022) Genetic parameters of color phenotypes of black tiger shrimp (Penaeus monodon). Frontiers in Genetics, 13.
Huerlimann R, Cowley J, Wade N, Wang Y, Kasinadhuni N, Chan C, Jabbari J, Siemering K, Gordon L, Tinning M, Montenegro J, Maes G, Sellars M, Coman G, McWilliam S, Zenger K, Khatkar M, Raadsma H, Donovan D, Krishna G and Jerry D (2022) Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence. G3: Genes, Genomes, Genetics, 12 (4).
Hari K, Jaiteh V and Chin A (2022) The sharks and rays of Palau: Biological diversity, status, and social and cultural dimensions. Pacific Conservation Biology, 28 (5). pp. 398-413
Hoel K, Chin A and Lau J (2022) Clashing conservation values: The social complexities of shark depredation. Biological Conservation, 272.
Jerry D, Jones D, Lillehammer M, Massault C, Loughnan S, Cate H, Harrison P, Strugnell J, Zenger K and Robinson N (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549
Jog K, Sutaria D, Diedrich A, Grech A and Marsh H (2022) Marine Mammal Interactions With Fisheries: Review of Research and Management Trends Across Commercial and Small-Scale Fisheries. Frontiers in Marine Science, 9.
Li J, Nankervis L and Dawson A (2022) Digesting the Indigestible: Microplastic Extraction from Prawn Digestive Tracts. Frontiers in Environmental Chemistry, 3.
Liyanage D, Lee S, Yang H, Lim C, Omeka W, Sandamalika W, Udayantha H, Kim G, Ganeshalingam S, Jeong T, Oh S, Won S, Koh H, Kim M, Jones D, Massault C, Jerry D and Lee J (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400
Martins A, Matley J, Heupel M, Fisk A, Chin A and Simpfendorfer C (2022) Trophic ecology of sympatric juvenile stingrays within a nursery area. Marine and Freshwater Research, 73 (5). pp. 676-686
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Maire, Eva, D'agata, Stephanie, Aliaume, Catherine, Mouillot, David, Darling, Emily S., Ramahery, Volanirina, Ranaivoson, Ravaka, Randriamanantsoa, Bemahafaly, Tianarisoa, Tantely F., Santisy, Abdoul, and Cinner, Joshua (2020) Disentangling the complex roles of markets on coral reefs in northwest Madagascar. Ecology and Society, 25 (3). 23.
McMahon, Shannon, Parsons, Darren M., Donelson, Jennifer, Pether, Steve M. J., and Munday, Philip L. (2020) Elevated temperature and CO₂ have positive effects on the growth and survival of larval Australasian snapper. Marine Environmental Research, 161. 105054.
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Moore, Bradley R., Adams, Tim, Allain, Valerie, Bell, Johann D., Bigler, Mark, Bromhead, Don, Clark, Sangaa, Davies, Campbell, Evans, Karen, Faasili, Ueta, Farley, Jessica, Fitchett, Mark, Grewe, Peter M., Hampton, John, Hyde, John, Leroy, Bruno, Lewis, Antony, Lorrain, Anne, Macdonald, Jed, Marie, Amandine D., Minte-Vera, Carolina, Natasha, Janice, Nicol, Simon, Obregon, Pablo, Peatman, Thomas, Pecoraro, Carlo, Phillip, N. Bradley, Pilling, Graham M., Rico, Ciro, Sanchez, Caroline, Scott, Robert, Phillips, Joe Scutt, Stockwell, Brian, Tremblay-Boyer, Laura, Usu, Thomas, Williams, Ashley J., and Smith, Neville (2020) Defining the stock structures of key commercial tunas in the Pacific Ocean II: sampling considerations and future directions. Fisheries Research, 230. 105524.
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Morais Araujo, Renato (2020) The productivity of coral reef fishes. PhD thesis, James Cook University.
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Scott, Abigail Lucy (2020) The role of herbivores as ecosystem engineers in Great Barrier Reef seagrass meadows. PhD thesis, James Cook University.
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Sherman, C. Samantha, Heupel, Michelle R., Moore, Stephen K., Chin, Andrew, and Simpfendorfer, Colin A. (2020) When sharks are away, rays will play: effects of top predator removal in coral reef ecosystems. Marine Ecology - Progress Series, 641. pp. 145-157.
Skilton, Dylan C., Saunders, Richard J., and Hutson, Kate S. (2020) Parasite attractants: identifying trap baits for parasite management in aquaculture. Aquaculture, 516. 734557.
Smallhorn-West, Patrick (2020) Assessing the impact of coral reef community management in the Kingdom of Tonga. PhD thesis, James Cook University.
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Smallhorn-West, Patrick F., Stone, Karen, Ceccarelli, Daniela M., Malimali, Siola'a, Halafihi, Tu'ikolongahau, Bridge, Tom C. L., Pressey, Robert L., and Jones, Geoffrey P. (2020) Community management yields positive impacts for coastal fisheries resources and biodiversity conservation. Conservation Letters, 13. e12755.
Smallhorn-West, Patrick F., Weeks, Rebecca, Gurney, Georgina, and Pressey, Robert L. (2020) Ecological and socioeconomic impacts of marine protected areas in the South Pacific: assessing the evidence base. Biodiversity and Conservation, 29 (2). pp. 349-380.
Smart, Jonathan J., White, William T., Baje, Leontine, Chin, Andrew, D'Alberto, Brooke M., Grant, Michael I., Mukherji, Sushmita, and Simpfendorfer, Colin A. (2020) Can multi-species shark longline fisheries be managed sustainably using size limits? Theoretically, yes. Realistically, no. Journal of Applied Ecology, 57 (9). pp. 1847-1860.
Song, Andrew M., Scholtens, Joeri, Barclay, Kate, Bush, Simon R., Fabinyi, Michael, Adhuri, Dedi S., and Haughton, Milton (2020) Collateral damage? Small-scale fisheries in the global fight against IUU fishing. Fish and Fisheries, 21 (4). pp. 831-843.
Spijkers, Jessica (2020) Global patterns of international fisheries conflict. PhD thesis, Stockholm University and James Cook University.
Steinberg, Rosemary K., van der Meer, Martin H., Pratchett, Morgan S., van Herwerden, Lynne, and Hobbs, Jean-Paul A. (2020) Keep your friends close and your anemones closer - ecology of the endemic wideband anemonefish, Amphiprion latezonatus. Environmental Biology of Fishes, 103. pp. 1513-1526.
Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.
Tulloch, Vivitskaia, Pirotta, Vanessa, Grech, Alana, Crocetti, Susan, Double, Michael, How, Jason, Kemper, Catherine, Meager, Justin, Palmer, Carol, Peddemors, Victor, Waples, Kelly, Watson, Mandy, and Harcourt, Robert (2020) Long-term trends and a risk analysis of cetacean entanglements and bycatch in fisheries gear in Australian waters. Biodiversity and Conservation, 29. pp. 251-282.
Vij, Shubha, Purushothanman, Kathiresan, Sridatta, Prakki Sai Rama, and Jerry, Dean R. (2020) Transcriptomic analysis of gill and kidney from Asian seabass (Lates calcarifer) acclimated to different salinities reveals pathways involved with euryhalinity. Genes, 11 (7). 733.
Wakefield, Corey B., Williams, Ashley J., Fisher, Emily A., Hall, Norman G., Hesp, Sybrand A., Halafihi, Tuikolongahau, Kaltavara, Jeremie, Vourey, Elodie, Taylor, Brett M., O'malley, Joseph M., Nicol, Simon J., Wise, Brent S., and Newman, Stephen J. (2020) Variations in life history characteristics of the deep-water giant ruby snapper (Etelis sp.) between the Indian and Pacific Oceans and application of a data-poor assessment. Fisheries Research, 230. 105651.
Whalan, Mathew A., Whippo, Ross D.B., Stachowicz, John J., York, Paul H., Aiello, Erin, Alcoverro, Teresa, Altieri, Andrew H., Bertolini, Camilla, Benedetti-Cecchi, Lisandro, Bresch, Midoli, Bulleri, Fabio, Carnell, Paul E., Cimon, Stéphanie, Connolly, Rod M., Cusson, Mathieu, Diskin, Meredith S., D'Souza, Elrika, Flores, Augusto A.V., Fodrie, F. Joel, Galloway, Aaron W.E., Gaskins, Leo C., Graham, Olivia J., Hanley, Torrance C., Henderson, Christopher J., Hereu, Clara M., Hessing-Lewis, Margot, Hovel, Kevin A., Hughes, Brent B., Hughes, A. Randall, Hultgren, Kristin M., Jänes, Holger, Janiak, Dean S., Johnston, Lane N., Jorgensen, Pablo, Kelaher, Brendan P., Kruschel, Claudia, Lanham, Brendan S., Lee, Kun-Seop, Lefcheck, Jonathan S., Lozano-Álvarez, Enrique, Macreadie, Peter I., Monteith, Zachary L., O'Connor, Nessa E., Olds, Andrew D., O'Leary, Jennifer K., Patrick, Christopher J., Pino, Oscar, Poore, Alistair G.B., Rasheed, Michael A., Raymond, Wendel W., Reiss, Katrin, Rhoades, O. Kennedy, Robinson, Max T., Ross, Paige G., Rossi, Francesca, Schlacher, Thomas A., Seemann, Janina, Silliman, Brian R., Smee, Delbert L., Thiel, Martin, Unsworth, Richard K.F., van Tussenbroek, Brigitta I., Vergés, Adriana, Yeager, Mallarie E., Yednock, Bree K., Ziegler, Shelby L., and Duffy, J. Emmett (2020) Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences of the United States of America, 117 (45). pp. 28160-28166.
Winter, Sara Tabea, Fahmi, , Rudianto, Didik, Laglbauer, Betty J.L., Ender, Isabel, and Simpfendorfer, Colin A. (2020) Immature individuals dominate elasmobranch fisheries of the Bali Strait. Marine and Freshwater Research, 71 (11). pp. 1488-1500.
Winther, Jan Gunnar, Dai, Minhan, Rist, Therese, Hoel, Alf Håkon, Li, Yangfan, Trice, Amy, Morrissey, Karyn, Juinio-Meñez, Marie Antonette, Fernandes, Leanne, Unger, Sebastian, Scarano, Fabio Rubio, Halpin, Patrick, and Whitehouse, Sandra (2020) Integrated ocean management for a sustainable ocean economy. Nature Ecology and Evolution, 4 (11). pp. 1451-1458.
Wolfe, Kennedy, Anthony, Ken, Babcock, Russell C., Bay, Line, Bourne, David G., Burrows, Damien, Byrne, Maria, Deaker, Dione, Diaz-Pulido, Guillermo, Frade, Pedro, Gonzalez-Rivero, Manuel, Hoey, Andrew, Hoogenboom, Mia, McCormick, Mark, Ortiz, Juan Carlos, Razak, Tries, Richardson, Anthony J., Roff, George, Sheppard-Brennand, Hannah, Stella, Jessica, Thompson, Angus, Watson, Sue-Ann, Webster, Nicole, Audas, Donna, Beeden, Roger, Carver, Jesseca, Cowlishaw, Mel, Dyer, Michelle, Groves, Paul, Horne, Dylan, Thiault, Lauric, Vains, Jason, Wachenfeld, David, Weekers, Damien, Williams, Genevieve, and Mumby, Peter J. (2020) Priority species to support the functional integrity of coral reefs. Oceanography and Marine Biology: an annual review, 58. pp. 179-318.
Worthington, Thomas A., zu Ermgassen, Philine S.E., Friess, Daniel A., Krauss, Ken W., Lovelock, Catherine E., Thorley, Julia, Tingey, Rick, Woodroffe, Colin D., Bunting, Pete, Cormier, Nicole, Lagomasino, David, Lucas, Richard, Murray, Nicholas J., Sutherland, William J., and Spalding, Mark (2020) A global biophysical typology of mangroves and its relevance for ecosystem structure and deforestation. Scientific Reports, 10 (1). 14652.
Worthington, Thomas A., Andradi-Brown, Dominic A., Bhargava, Radhika, Buelow, Christina, Bunting, Pete, Duncan, Clare, Fatoyinbo, Lola, Friess, Daniel A., Goldberg, Liza, Hilarides, Lammert, Lagomasino, David, Landis, Emily, Longley-Wood, Kate, Lovelock, Catherine E., Murray, Nicholas J., Narayan, Siddharth, Rosenqvist, Ake, Sievers, Michael, Simard, Marc, Thomas, Nathan, van Eijk, Pieter, Zganjar, Chris, and Spalding, Mark D. (2020) Harnessing big data to support the conservation and rehabilitation of mangrove forests globally. One Earth, 2 (5). pp. 429-443.
Zu Ermgassen, Philine S. E., Thurstan, Ruth H., Corrales, Jorge, Alleway, Heidi, Carranza, Alvar, Dankers, Norbert, DeAngelis, Bryan, Hancock, Boze, Kent, Flora, McLeod, Ian, Pogoda, Bernadette, Liu, Qing, and Sanderson, William G. (2020) The benefits of bivalve reef restoration: a global synthesis of underrepresented species. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (11). pp. 2050-2065.
Aibinu I, Smooker P and Lopata A (2019) Anisakis nematodes in fish and shellfish- from infection to allergies. International Journal for Parasitology: Parasites and Wildlife, 9. pp. 384-393
Baker R, Barnett A, Bradley M, Abrantes K and Sheaves M (2019) Contrasting seascape use by a coastal fish assemblage: a multi-method approach. Estuaries and Coasts, 42 (1). pp. 292-307
Barrios-Garrido H, Wildermann N, Diedrich A and Hamann M (2019) Conflicts and solutions related to marine turtle conservation initiatives in the Caribbean basin: identifying new challenges. Ocean and Coastal Management, 171. pp. 19-27
Caruana N, Strugnell J, Faou P, Finn J and Cooke I (2019) Comparative proteomic analysis of slime from the striped pyjama squid, Sepioloidea lineolata, and the southern bottletail squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research, 18 (3). pp. 890-899
Dale P, Sporne I, Knight J, Sheaves M, Eslami-Andergoli L and Dwyer P (2019) A conceptual model to improve links between science, policy and practice in coastal management. Marine Policy, 103. pp. 42-49
Diedrich A, Benham C, Pandihau L and Sheaves M (2019) Social capital plays a central role in transitions to sportfishing tourism in small-scale fishing communities in Papua New Guinea.Ambio, 48 (4). pp. 385-396
Diedrich A, Blythe J, Petersen E, Euriga E, Fatchiya A, Shimada T and Jones C (2019) Socio-economic drivers of adoption of small-scale aquaculture in Indonesia. Sustainability, 11 (6).
Dubuc A, Waltham N, Baker R, Marchand C and Sheaves M (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4).
George L, Martins A, Heupel M and Simpfendorfer C (2019) Fine-scale movements of juvenile blacktip reef sharks Carcharhinus melanopterus in a shallow nearshore nursery. Marine Ecology Progress Series, 623. pp. 85-97
Glasson C, Donnet L, Angell A, Vucko M, Lorbeer A, Vamvounis G, de Nys R and Magnusson M (2019) Multiple response optimisation of the aqueous extraction of high quality ulvan from Ulva ohnoi. Bioresource Technology Reports, 7.
Gomes G, Hutson K, Domingos J, Infante Villamil S, Huerlimann R, Miller T and Jerry D (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201
Grant M, Kyne P, Simpfendorfer C, White W and Chin A (2019) Categorising use patterns of non-marine environments by elasmobranchs and a review of their extinction risk. Reviews in Fish Biology and Fisheries, 29 (3). pp. 1-22
Han G, Cartwright S, Ganmanee M, Chan B, Adzis K, Hutchinson N, Wang J, Hui T, Williams G and Dong Y (2019) High thermal stress responses of Echinolittorina snails at their range edge predict population vulnerability to future warming. Science of the Total Environment, 647. pp. 763-771
Heupel M, Munroe S, Ledee E, Chin A and Simpfendorfer C (2019) Interspecific interactions, movement patterns and habitat use in a diverse coastal shark assemblage. Marine Biology, 166 (6).
Hilder P, Battaglene S, Hart N, Collin S and Cobcroft J (2019) Retinal adaptations of southern bluefin tuna larvae: implications for culture. Aquaculture, 507. pp. 222-232
Hua K, Suwendi E and Bureau D (2019) Effect of body weight on lysine utilization efficiency in Nile Tilapia (Oreochromis niloticus). Aquaculture, 505. pp. 47-53
Hua K, Koppe W and Fontanillas R (2019) Effects of dietary protein and lipid levels on growth, body composition and nutrient utilization of Channa striata. Aquaculture, 501. pp. 368-373
Jiang J, Nuez Ortin W, Angell A, Zeng C, de Nys R and Vucko M (2019) Enhancing the colouration of the marine ornamental fish Pseudochromis fridmani using natural and synthetic sources of astaxanthin. Algal Research, 42.
March D, Ariel E, Munns S, Rudd D, Blyde D, Christidis L and Kelaher B (2019) Physiological changes in post-hatchling green turtles (Chelonia mydas) following short-term fasting: implications for release protocols. Conservation Physiology, 7 (1).
Maclaine A, Forzan M, Mashkour N, Scott J and Ariel E (2019) Pathogenesis of Bohle iridovirus (genus Ranavirus) in experimentally infected juvenile eastern water dragons (Intellagama lesueurii lesueurii). Veterinary Pathology, 56 (3). pp. 465-475
Magnusson M, Glasson C, Vucko M, Angell A, Neoh T and de Nys R (2019) Enrichment processes for the production of high-protein feed from the green seaweed Ulva ohnoi. Algal Research, 41.
Marchese G, Fitzgibbon Q, Trotter A, Carter C, Jones C and Smith G (2019) The influence of flesh ingredients format and krill meal on growth and feeding behaviour of juvenile tropical spiny lobster Panulirus ornatus. Aquaculture, 499. pp. 128-139
Marshall N, Thiault L, Beeden A, Beeden R, Benham C, Curnock M, Diedrich A, Gurney G, Jones L, Marshall P, Nakamura N and Pert P (2019) Our environmental value orientations influence how we respond to climate change. Frontiers in Psychology, 10.
Mizrahi M, Duce S, Pressey R, Simpfendorfer C, Weeks R and Diedrich A (2019) Global opportunities and challenges for shark large marine protected areas. Biological Conservation, 234. pp. 107-115
Mizrahi M, Diedrich A, Weeks R and Pressey R (2019) A systematic review of the socioeconomic factors that influence how marine protected areas impact on ecosystems and livelihoods. Society and Natural Resources, 32 (1). pp. 4-20
Nowland S, Silva C, Southgate P and Strugnell J (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20.
Praeger C, Vucko M, de Nys R and Cole A (2019) Maximising the productivity of the attached cultivation of Ulva tepida in land-based systems. Algal Research, 40.
Rodríguez-Moreno M, Zapata F, Ramírez-Calero S, van Herwerden L and Feldheim K (2019) Highly polymorphic microsatellite loci for the Acapulco damselfish, Stegastes acapulcoensis, and cross amplification in three congeneric species. Marine Biodiversity, 49 (1). pp. 481-486
Silva C, Villacorta-Rath C, Woodings L, Murphy N, Green B, Hartmann K, Gardner C, Bell J and Strugnell J (2019) Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries, 29 (3). pp. 669-687
Thorbjørnsen S, Moland E, Simpfendorfer C, Heupel M, Knutsen H and Olsen E (2019) Potential of a no-take marine reserve to protect home ranges of anadromous brown trout (Salmo trutta). Ecology and Evolution, 9 (1). pp. 417-426
Whitelaw B, Cooke I, Finn J, Zenger K and Strugnell J (2019) The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena). Aquatic Toxicology, 206. pp. 114-122
Book Chapters
Heupel M, Kessel S, Matley J and Simpfendorfer C (2018) Acoustic telemetry. In: Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series. CRC Press, Boca Raton, FL, USA, pp. 133-156
Konovalov D, Domingos J, White R and Jerry D (2018) Automatic scaling of fish images. Proceedings of the 2nd International Conference on Advances in Image Processing. In: ICAIP 18: 2nd International Conference on Advances in Image Processing, 16-18 June 2018, Chengdu, China
Chin A and Pecl G (2018) Citizen science in shark and ray research and conservation: strengths, opportunities, considerations and pitfalls. In: Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series. CRC Press, Boca Raton, FL, USA, pp. 299-317
Publications
Ahasan M, Waltzek T, Huerlimann R and Ariel E (2018) Comparative analysis of gut bacterial communities of green turtles (Chelonia mydas) pre-hospitalization and post-rehabilitation by high-throughput sequencing of bacterial 16S rRNA gene. Microbiological Research, 207. pp. 91-99
Angell A, de Nys R, Mangott A and Vucko M (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585
Baje L, Smart J, Chin A, White W and Simpfendorfer C (2018) Age, growth and maturity of the Australian sharpnose shark Rhizoprionodon taylori from the Gulf of Papua. PLoS ONE, 13 (10)
Bao C, Yang Y, Zeng C, Huang H and Ye H (2018) Identifying neuropeptide GPCRs in the mud crab, Scylla paramamosain, by combinatorial bioinformatics analysis. General and Comparative Endocrinology, 269. pp. 122-130
Barrios-Garrido H, Palmar J, Wildermann N, Rojas-Cañizales D, Diedrich A and Hamann M(2018) Marine turtle presence in the traditional pharmacopoeia, cosmovision, and beliefs of Wayuú indigenous people. Chelonian Conservation and Biology, 17 (2). pp. 177-186
Benham C and Hussey K (2018) Mainstreaming deliberative principles in Environmental Impact Assessment: current practice and future prospects in the Great Barrier Reef, Australia.Environmental Science and Policy, 89. pp. 176-183
Bierwagen S, Heupel M, Chin A and Simpfendorfer C (2018) Trophodynamics as a tool for understanding coral reef ecosystems. Frontiers in Marine Science, 5.
Bierwagen S, Emslie M, Heupel M, Chin A and Simpfendorfer C (2018) Reef-scale variability in fish and coral assemblages on the central Great Barrier Reef. Marine Biology, 165.
Bonebrake T, Brown C, Bell J, Blanchard J, Chauvenet A, Champion C, Chen I, Clark T, Colwell R, Danielsen F, Dell A, Donelson J, Evengård B, Ferrier S, Frusher S, Garcia R, Griffis R, Hobday A, Jarzyna M, Lee E, Lenoir J, Linnetved H, Martin V, McCormack P, McDonald J, McDonald-Madden E, Mitchell N, Mustonen T, Pandolfi J, Pettorelli N, Possingham H, Pulsifer P, Reynolds M, Scheffers B, Sorte C, Strugnell J, Tuanmu M, Twiname S, Vergés A, Villanueva C, Wapstra E, Wernberg T and Pecl G (2018) Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science. Biological Reviews, 93 (1). pp. 284-305
Campbell M, McLennan M, Courtney A and Simpfendorfer C (2018) Post-release survival of two elasmobranchs, the eastern shovelnose ray (Aptychotrema rostrata) and the common stingaree (Trygonoptera testacea), discarded from a prawn trawl fishery in southern Queensland, Australia.Marine and Freshwater Research, 69 (4). pp. 551-561
Caron A, Thomas C, Berry K, Motti C, Ariel E and Brodie J (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823
Chen Z, Wang G, Zeng C and Wu L (2018) Comparative study on the effects of two diatoms as diets on planktonic calanoid and benthic harpacticoid copepods. Journal of Experimental Zoology, Part A, 329 (3). pp. 140-148
Cole A, Praeger C, Mannering T, de Nys R and Magnusson M (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216
Domingos J, Budd A, Banh Q, Goldsbury J, Zenger K and Jerry D (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9).
Egan J, Bloom D, Kuo C, Hammer M, Tongnunui P, Iglésias S, Sheaves M, Grudpan C and Simons A (2018) Phylogenetic analysis of trophic niche evolution reveals a latitudinal herbivory gradient in Clupeoidei (herrings, anchovies, and allies). Molecular Phylogenetics and Evolution, 124. pp. 151-161
Fingerhut L, Strugnell J, Faou P, Labiaga À, Zhang J and Cooke I (2018) Shotgun proteomics analysis of saliva and salivary gland tissue from the common octopus Octopus vulgaris. Journal of Proteome Research, 17 (11). pp. 3866-3876
Genodepa J, Zeng C and Southgate P (2018) Changes in digestive enzyme activities and nutrient utilization during embryonic development and starvation of newly hatched larvae of the mud crab, Scylla serrata. Aquaculture, 493. pp. 137-143
Gillies C, McLeod I, Alleway H, Cook P, Crawford C, Creighton C, Diggles B, Ford J, Hamer P, Heller-Wagner G, Lebrault E, Le Port A, Russell K, Sheaves M and Warnock B (2018) Australian shellfish ecosystems: past distribution, current status and future direction. PLoS ONE, 13 (2).
Grant M, Smart J, White W, Chin A, Baje L and Simpfendorfer C (2018) Life history characteristics of the silky shark Carcharhinus falciformis from the central west Pacific. Marine and Freshwater Research, 69 (4). pp. 562-573
Goetze J, Langlois T, McCarter J, Simpfendorfer C, Hughes A, Tingo Leve J and Jupiter S (2018) Drivers of reef shark abundance and biomass in the Solomon Islands. PLoS ONE, 13 (7).
Gutt J, Isla E, Bertler A, Bodeker G, Bracegirdle T, Cavanagh R, Comiso J, Convey P, Cummings V, De Conto R, De Master D, di Prisco G, D'Ovidio F, Griffiths H, Khan A, Lopez-Martinez J, Murray A, Nielsen U, Ott S, Post A, Ropert-Coudert Y, Saucede T, Scherer R, Schiaparelli S, Scholss I, Smith C, Stefels J, Steven C, Strugnell J, Trimborn S, Verde C, Verleyen E, Wall D, Wilson N and Xavier J (2018) Cross-disciplinarity in the advance of Antarctic ecosystem research. Marine Genomics, 37.
Guppy J, Jones D, Jerry D, Wade N, Raadsma H, Huerlimann R and Zenger K (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9.
Hall R, Robson S and Ariel E (2018) Colour vision of green turtle (Chelonia mydas) hatchlings: do they still prefer blue under water? PeerJ, 6.
Heupel M, Lédée E and Simpfendorfer C (2018) Telemetry reveals spatial separation of co-occurring reef sharks. Marine Ecology - Progress Series, 589. pp. 179-192
Huerlimann R, Wade N, Gordon L, Montenegro J, Goodall J, McWilliam S, Tinning M, Siemering K, Giardina E, Donovan D, Sellars M, Cowley J, Condon K, Coman G, Khatkar M, Raadsma H, Maes G, Zenger K and Jerry D (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8.
Infante Villamil S, Huerlimann R, Morianos C, Sarnyai Z and Maes G (2018) Adverse effect of early life high-fat/high-carbohydrate ('Western') diet on bacterial community in the distal bowel of mice. Nutrition Research, 50. pp. 25-36
Jabado R, Kyne P, Pollom R, Ebert D, Simpfendorfer C, Ralph G, Al Dhaheri S, Akhilesh K, Ali K, Ali M, Al Mamari T, Bineesh K, El Hassan I, Fernando D, Grandcourt E, Khan M, Moore A, Owfi F, Robinson D, Romanov E, Soares A, Spaet J, Tesfamichael D, Valinassab T and Dulvy N (2018) Troubled waters: threats and extinction risk of the sharks, rays and chimaeras of the Arabian Sea and adjacent waters. Fish and Fisheries, 19 (6). pp. 1043-1062
Jones C (2018) Progress and obstacles in establishing rock lobster aquaculture in Indonesia. Bulletin of Marine Science, 94 (3). pp. 1223-1233
Jones K, Jensen M, Burgess G, Leonhardt J, van Herwerden L, Hazel J, Hamann M, Bell I and Ariel E (2018) Closing the gap: mixed stock analysis of three foraging populations of green turtles (Chelonia mydas) on the Great Barrier Reef. PeerJ, 6.
Kelly E, Martin P, Gibson-Kueh S, Morgan D, Ebner B, Donaldson J, Buller N, Crook D, Brooks S, Davis A, Hammer M, Foyle L, Hair S and Lymbery A (2018) First detection of Edwardsiella ictaluri (Proteobacteria: Enterobacteriaceae) in wild Australian catfish. Journal of Fish Diseases, 41 (2). pp. 199-208
Konovalov D, Saleh A, Domingos J, White R and Jerry D (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23
Lane D, Truong E, Larizza F, Chiew P, de Nys R and van Eyk P (2018) Effect of hydrothermal carbonization on the combustion and gasification behavior of agricultural residues and macroalgae: devolatilization characteristics and char reactivity. Energy & Fuels, 32 (4). pp. 4149-4159
Li X, Norman H, Kinley R, Laurence M, Wilmot M, Bender H, de Nys R and Tomkins N (2018) Asparagopsis taxiformis decreases enteric methane production from sheep. Animal Production Science, 58 (4). pp. 681-688
Litvin S, Weinstein M, Sheaves M and Nagelkerken I (2018) What makes nearshore habitats nurseries for nekton? An emerging view of the nursery role hypothesis. Estuaries and Coasts, 41 (6). pp. 1539-1550
Long X, Wu X, Zhao L, Ye H, Cheng Y and Zeng C (2018) Physiological responses and ovarian development of female Chinese mitten crab Eriocheir sinensis subjected to different salinity conditions. Frontiers in Physiology, 8.
Machado L, Tomkins N, Magnusson M, Midgley D, de Nys R and Rosewarne C (2018) In vitro response of rumen microbiota to the antimethanogenic red acroalga Asparagopsis taxiformis.Microbial Ecology, 75 (3). pp. 811-818
Maclaine A, Mashkour N, Scott J and Ariel E (2018) Susceptibility of eastern water dragons Intellagama lesueurii lesueurii to Bohle iridovirus. Diseases of Aquatic Organisms, 127. pp. 97-105
MacKeracher T, Diedrich A and Simpfendorfer C (2018) Sharks, rays and marine protected areas: a critical evaluation of current perspectives. Fish and Fisheries, 20 (2). pp. 255-267
MacKeracher T, Diedrich A, Gurney G and Marshall N (2018) Who trusts who in the Great Barrier Reef? Exploring trust and communication in natural resource management. Environmental Science & Policy, 88. pp. 24-31
March D, Vinette-Herrin K, Peters A, Ariel E, Blyde D, Hayward D, Christidis L and Kelaher B (2018) Hematologic and biochemical characteristics of stranded green sea turtles. Journal of Veterinary Diagnostic Investigation, 30 (3). pp. 423-429
Martins A, Heupel M, Chin A and Simpfendorfer C (2018) Batoid nurseries: definition, use and importance. Marine Ecology - Progress Series, 595. pp. 253-267
Martins A, Feitosa L, Lessa R, Almeida Z, Heupel M, Silva W, Tchaicka L and Silva Nunes J (2018) Analysis of the supply chain and conservation status of sharks (Elasmobranchii: Superorder Selachimorpha) based on fisher knowledge. PLoS One, 13 (3).
Mashkour N, Maclaine A, Burgess G and Ariel E (2018) Discovery of an Australian Chelonia mydas papillomavirus via green turtle primary cell culture and qPCR. Journal of Virological Methods, 258. pp. 13-23
Mendez D, Foyle L, Cobbold R and Speare R (2018) Survey of rabies vaccination status of Queensland veterinarians and veterinary students. Australian Veterinary Journal, 96 (5). pp. 155-160
Morse P, Huffard C, Meekan M, McCormick M and Zenger K (2018) Mating behaviour and postcopulatory fertilization patterns in the southern blue-ringed octopus, Hapalochlaena maculosa. Animal Behaviour, 136. pp. 41-51
Morse P, Kjeldsen S, Meekan M, McCormick M, Finn J, Huffard C and Zenger K (2018) Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod - the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Ecology and Evolution, 8 (4). pp. 2253-2267
Nugraha R, Kamath S, Johnston E, Zenger K, Rolland J, O’Hehir R and Lopata A (2018) Rapid and comprehensive discovery of unreported shellfish allergens using large-scale transcriptomic and proteomic resources. Journal of Allergy and Clinical Immunology, 141 (4). pp. 1501-1504
Noordin N, Zeng C and Southgate P (2018) Progress in diet development for blue swimmer crab, Portunus pelagicus, juveniles: effect of dietary phospholipid on survival, development, growth and resistance to osmotic shock. Aquaculture Nutrition, 24 (6). pp. 1834-1844
Praeger C and de Nys R (2018) A new dimension in algal cultivation – 3D printed structures with a range of buoyancies. Algal Research, 36. pp. 209-216
Praeger C and de Nys R (2018) Improvement of the seeding of filamentous Ulva tepida on free-floating surfaces. Algal Research, 30. pp. 73-78
Reid A and Strugnell J (2018) A new pygmy squid, Idiosepius hallami n. sp (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic 'notoides' clade to a new genus, Xipholeptos n. gen. Zootaxa, 4369 (4). pp. 451-486
Roberts D, Shiels L, Tickle J, de Nys R and Paul N (2018) Bioremediation of aluminium from the waste water of a conventional water treatment plant using the freshwater macroalga Oedogonium. Water, 10 (5)
Rolland J, Varese N, Abramovitch J, Anania J, Nugraha R, Kamath S, Hazard A, Lopata A and O’Hehir R (2018) Effect of heat processing on IgE reactivity and cross-reactivity of Tropomyosin and other allergens of Asia-Pacific mollusc species: identification of novel Sydney rock oyster Tropomyosin Sac g 1. Molecular Nutrition & Food Research, 62 (14).
Ruethers T, Taki A, Johnston E, Nugraha R, Le T, Kalic T, McLean T, Kamath S and Lopata A(2018) Seafood allergy: a comprehensive review of fish and shellfish allergens. Molecular Immunology, 100. pp. 28-57
Ruethers T, Raith M, Sharpe M, Koeberl M, Stephen J, Nugraha R, Le T, Quirce S, Nguyen H, Kamath S, Mehr S, Campbell D, Bridges C, Taki A, Swoboda I and Lopata A (2018) Characterization of Ras k 1 a novel major allergen in Indian mackerel and identification of parvalbumin as the major fish allergen in 33 Asia-Pacific fish species. Clinical & Experimental Allergy, 48 (4). pp. 452-463
Sakuna K, Elliman J and Owens L (2018) Therapeutic trials against pre-existing Chequa iflavirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 492. pp. 9-14
Sakuna K, Elliman J, Tzamouzaki A and Owens L (2018) A novel virus (order Bunyavirales) from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Australia. Virus Research, 250. pp. 7-12
Sakuna K, Elliman J and Owens L (2018) Comparison of molecular detection PCR methods for chequa iflavirus in freshwater crayfish, Cherax quadricarinatus. Journal of Virological Methods, 251. pp. 139-144
Sandanam A, Diedrich A, Gurney G and Richardson T (2018) Perceptions of cyclone preparedness: assessing the role of individual adaptive capacity and social capital in the Wet Tropics, Australia. Sustainability, 10 (4).
Sheaves M, Johnston R, Miller K and Nelson P (2018) Impact of oil palm development on the integrity of riparian vegetation of a tropical coastal landscape. Agriculture, Ecosystems and Environment, 262. pp. 1-10
Sherman C, Chin A, Heupel M and Simpfendorfer C (2018) Are we underestimating elasmobranch abundances on baited remote underwater video systems (BRUVS) using traditional metrics? Journal of Experimental Marine Biology and Ecology, 503. pp. 80-85
Stilwell N, Whittington R, Hick P, Becker J, Ariel E, van Beurden S, Vendramin N, Olesen N and Waltzek T (2018) Partial validation of a TaqMan real-time quantitative PCR for the detection of ranaviruses. Diseases of Aquatic Organisms, 128 (2). pp. 105-116
Strugnell J, Pedro J and Wilson N (2018) Dating Antarctic ice sheet collapse: proposing a molecular genetic approach. Quaternary Science Reviews, 179. pp. 153-157
Syafrizal S, Jones C, Permana I and Utomo N (2018) Effect of feeding frequency on survival and growth of juvenile spiny lobster Panulirus versicolor in Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 11 (5). pp. 1427-1434
Villacorta-Rath C, Souza C, Murphy N, Green B, Gardner C and Strugnell J (2018) Temporal genetic patterns of diversity and structure evidence chaotic genetic patchiness in a spiny lobster.Molecular Ecology, 27 (1). pp. 54-65
Waltham N and Sheaves M (2018) Eco-engineering rock pools to a seawall in a tropical estuary: microhabitat features and fine sediment accumulation. Ecological Engineering, 120. pp. 631-636
Wirth W, Schwarzkopf L, Skerratt L and Ariel E (2018) Ranaviruses and reptiles. PeerJ, 6.
Woodings L, Murphy N, Doyle S, Hall N, Robinson A, Liggins G, Green B, Cooke I, Bell J and Strugnell J (2018) Outlier SNPs detect weak regional structure against a background of genetic homogeneity in the Eastern Rock Lobster, Sagmariasus verreauxi. Marine Biology, 165 (12).
Xu X, Wang G, Zeng C and Li S (2018) Parentage determination of the mud crab Scylla paramamosain using microsatellite markers. Aquaculture Research, 49 (1). pp. 217-221
Zeh D, Heupel M, Hamann M, Jones R, Limpus C and Marsh H (2018) Evidence of behavioural thermoregulation by dugongs at the high latitude limit to their range in eastern Australia. Journal of Experimental Marine Biology and Ecology, 508. pp. 27-34
Zeng C, Shao L, Ricketts A and Moorhead J (2018) The importance of copepods as live feed for larval rearing of the green mandarin fish Synchiropus splendidus. Aquaculture, 491. pp. 65-71
Zhang R, Yuen A, Magnusson M, Wright J, de Nys R, Masters A and Maschmeyer T (2018) A comparative assessment of the activity and structure of phlorotannins from the brown seaweed Carpophyllum flexuosum. Algal Research, 29. pp. 130-141
Zhu Y, Van Eyk P, Boman C, Brostrom M, Kirtania K, Piotrowska P, Bostrom D, de Nys R, Bhattacharya S, Gentili F and Ashman P (2018) Preliminary understanding on the ash behavior of algae during cogasification in an entrained flow reactor. Fuel Processing Technology, 175. pp. 26-34
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